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Tutorials
Infer CNV on lung cancer dataset
Reproduce the heatmap from inferCNV
The inferCNV method
API
infercnvpy.io.genomic_position_from_biomart
infercnvpy.io.genomic_position_from_gtf
infercnvpy.io.read_scevan
infercnvpy.pp.neighbors
infercnvpy.tl.infercnv
infercnvpy.tl.copykat
infercnvpy.tl.cnv_score
infercnvpy.tl.ithcna
infercnvpy.tl.ithgex
infercnvpy.tl.pca
infercnvpy.tl.umap
infercnvpy.tl.tsne
infercnvpy.tl.leiden
infercnvpy.pl.chromosome_heatmap
infercnvpy.pl.chromosome_heatmap_summary
infercnvpy.pl.umap
infercnvpy.pl.tsne
infercnvpy.datasets.maynard2020_3k
infercnvpy.datasets.oligodendroglioma
Contributing guide
Changelog
References
.rst
.pdf
Tutorials
Tutorials
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Contents:
Infer CNV on lung cancer dataset
Reproduce the heatmap from inferCNV